AKos
Consulting & Solutions GmbH
a chemoinformatics company

 

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Delivering molecules for research

 15 Million Molecules available to order
8 Million Molecules available on stock

 Managed from enquiry to delivery
From
single molecules to screening libraries of thousands of molecules

 AKosSamples  has built the trust of hundreds of customers, from multinational pharmaceutical companies to contract and university research labs across the globe. With over ten years of experience of supplying research molecules, AKosSamples has the knowledge, experience and systems to take care of the complexities of sourcing research molecules for you.

The AKosSamples custom synthesis service is able to rapidly tender requests across its growing network of chemistry laboratories to provide research molecules not otherwise available. 

Full Structure Search in iScienceSearch
 

You can do a full structure search using AKosSamples using iScienceSearch. You can type a name in the text box, and hope that the system finds a structure, or being on the safe side, use the button "Find structure for name" on the top left to create a structure from a name. You can do a substructure search using PubChem as source. You can limit the list to AKosSamples by choosing in the "Advanced Search" in the PubChem result AKos Cons... as source - it is in pull down option at the bottom.

Use iScienceSearch to search compounds on the Internet by structure. Sometimes the situation arises that you have the AKos Number, but not the structure. An easy way is to search for the AKos Number in PubChem, http://pubchem.ncbi.nlm.nih.gov/search/ or use the test version:http://akosservice.de/akossamplesservice/php/akossamplesretrievalTest4.php?IDNUMBERS=AKOS015926121 where you replace the last 9 digits.

Contact Information for compound requests:
Greta Auf der Maur
Tel. +49 7621 162 2778
Fax +49 7621 162 2779
Email:


AKos Consulting & Solutions Deutschland GmbH (AKos GmbH)

Austr. 26
D-78585 Steinen
Germany
Tel.        +49 7627 970068
Fax:       +49 7627 970067
Mobil:    +49 171 526 9392

Email:
Please, use the keyword "Beilstein" in the subject (reference) line in the email to make sure that your email does not end up in a spam folder.

Would you  like to send a compound request?

Search for compounds using iOS and Android devices using the app:

MOBILE REAGENTS

see

www.mobilereagents.com

Estimated prices: The pricing depends very heavily on commission and shipping charges per order. The prices given are estimates for an order of 3 compounds and a minimum order of 300 Euro.  

Larger orders and large quantities (> 250 mg) will be priced separately.

Delivery time: Compounds that are on stock can be delivered in less than 2 weeks after we have received your order. Even if the compounds are on stock it takes some time to get them through custom procedures, which are sometimes time consuming. This is the reason that it takes sometimes two weeks.

The AKosSamples Catalogue: download below as compressed SDFiles: 

 

size (MB)

 
AKOS_1stMillion.7z 211
AKOS_2ndMillion.7z 282
AKOS_3rdMillion.7z 268
AKOS_4thMillion.7z 256
AKOS_5thMillion.7z 147
AKOS_6thMillion.7z 49
   
AKOS_ED2_UPDATE_11_12_30_1.7z 151
AKOS_ED2_UPDATE_11_12_30_2.7z 202
AKOS_ED2_UPDATE_11_12_30_3.7z  165
AKOS_ED2_UPDATE_12_08_20_1.7z 19
AKOS_ED2_UPDATE_12_08_20_2.7z 62
AKOS_ED2_UPDATE_12_08_20_3.7z 107
AKOS_ED2_UPDATE_12_08_20_4.7z 102
AKOS_ED2_UPDATE_12_08_20_5.7z 90
AKOS_ED2_UPDATE_12_08_20_6.7z 91
AKOS_ED2_UPDATE_12_08_20_7.7z 91
AKOS_ED2_UPDATE_12_08_20_8.7z 69
AKOS_ED2_UPDATE_12_08_20_9.7z 103

Click the file name to begin download, or right click and select "Save Target As" to download the installation file.
For ftp download configure a ftp client like shown below.
You can download the zip program from
http://www.7-zip.org/

Size of the database: 5.4 million compounds on stock, 7.8 million compounds in total. The compounds that are not on stock are predominantly compounds that were synthesized earlier, but are not available any longer.

We asked our chemists that do custom synthesis to add a few virtual compounds that describe there expertise. These are compounds that can be made with high confidence.

Special Offer:

Several of our suppliers offer larger collections for a very attractive price. We supply 5 mg of dry powders in vials or well-plates. Shipping cost is 150 € to Europe and 200 € to USA, of course, in the case of big order we'll send free of charge.
 

100-999 Compounds 40,50 € per compound
1000- 4999 Compounds 27,00 € per compound
5000 and more Compounds 20,25 € per compound

The files contain ca. 12000 structures. We also extracted the scaffolds using the KNIME Murcko node. We have added the PASS parameters to the download files. This enables you, not only to select your molecules by structure, but also by estimated biological effects (toxicities, gene expressions, etc.)

Type File Size
SDFile AK_final with Lipinsky (PASS12)_sdf.7z 8,0 Mb
Excel file with SMILES AK_72 PASS effects and Lipinsky_xls with smiles.xls 16,5 Mb
Excel file with structures. You need ISIS for Excel to work with this file. AK_72 PASS effects and Lipinsky_xls for ISISforExcel only.xls 35,5 Mb
ISIS/Base database AK_11809 cmps with Lipinsky and PASS ISISBase db.7z 7,9 Mb
Instant JChem database (Murcko scaffold are included) 2k screening cmpds Instant JChem db.7z 25,3 Mb
SDFile of extracted Murcko Scaffolds AK_deduplicated Murcko_sdf.7z 0,5 Mb
ISIS/Base database of the Murcko scaffolds AK_Deduplicated Murcko ISISBase db.7z 0,5 Mb

You can download the files either by clicking on the link, or using the ftp download, see below.

SDFile Example:: AKos_Samples_small_example.sdf

Symyx 07291014562D 1 1.00000 0.00000 0

10 9 0 0 0 999 V2000
-0.4071 -0.1575 0.0000 C 0 0 0 0 0 0 0 0 0
0.3054 0.2550 0.0000 N 0 0 0 0 0 0 0 0 0
-0.4071 -0.9908 0.0000 O 0 0 0 0 0 0 0 0 0
1.0179 -0.1575 0.0000 C 0 0 3 0 0 0 0 0 0
-1.1196 0.2467 0.0000 C 0 0 3 0 0 0 0 0 0
-1.8321 -0.1575 0.0000 Br 0 0 0 0 0 0 0 0 0
1.7387 0.2467 0.0000 C 0 0 0 0 0 0 0 0 0
1.0179 -0.9908 0.0000 C 0 0 0 0 0 0 0 0 0
0.8054 0.6342 0.0000 C 0 0 0 0 0 0 0 0 0
-1.1196 1.0717 0.0000 C 0 0 0 0 0 0 0 0 0
2 1 1 0 0 0
3 1 2 0 0 0
4 2 1 0 0 0
5 1 1 0 0 0
5 6 1 4 0 0
7 4 1 0 0 0
8 4 1 0 0 0
9 4 1 0 0 0
10 5 1 0 0 0
M END
>  <AKOS_NUMBER>
AKOS000100100
>  <MOLWEIGHT>
208.09616
>  <MOLFORMULA>
C7 H14 Br N O
>  <INCHIKEY>
ASGVEEBOYNWWJR-UHFFFAOYSA-N
>  <INCHI>
InChI=1S/C7H14BrNO/c1-5(8)6(10)9-7(2,3)4/h5H,1-4H3,(H,9,10)
>  <SMILES>
CC(C(=O)NC(C)(C)C)Br
>  <MOLECULE_URL>

http://akosservice.de/akossamplesservice/php/akossamplesretrieval.php?IDNUMBERS=AKOS000100100
>  <CATALOGUE_INFORMATION>
AKOS000100100 1G (Stock Building Block) 470 EUR
AKOS000100100 2G (Stock Building Block) 740 EUR
AKOS000100100 3G (Stock Building Block) 940 EUR
AKOS000100100 5G (Stock Building Block) 1220 EUR
AKOS000100100 7G (Stock Building Block) 1300 EUR
AKOS000100100 10G (Stock Building Block) 1500 EUR
AKOS000100100 12G (Stock Building Block) 1560 EUR
AKOS000100100 25G (Stock Building Block) 2340 EUR
AKOS000100100  (Stock Screening Sample)
AKOS000100100  (Stock Building Block)
AKOS000100100  (Non Stock Can be Resynthesised)
AKOS000100100  (Non Stock Custom Synthesis) 

$$$$

If you wish to provide a link from an AKOS_NUMBER to our molecule url from your database you can create a view using the SQL below. This will provide the latest sample type data (Building Block, Screening etc.) and price information if available directly from our sample database.

This SQL assumes that your molecule table is called AKOS_MOLTABLE which contains a column name AKOS_NUMBER, you should change these accordingly. The statement was created for and tested on an ORACLE database.

CREATE OR REPLACE FORCE VIEW "AKOS_VIEW" ("AKOS_NUMBER", "MOL_URL") AS
SELECT  AKOS_NUMBER,  'http://akosservice.de/akossamplesservice/php/akossamplesretrieval.php?IDNUMBERS=' || AKOS_NUMBER
FROM AKOS_MOLTABLE
ORDER BY AKOS_NUMBER;
SHOW ERRORS;

InChI:

We added the InChI name(http://www.iupac.org/inchi/) and key (http://www.iupac.org/inchi/release102.html) to the SDFiles. The InChI Name was developed first, but this can be quite long. The InChI code was developed so search engines can index it. This is shorter and also unique.

We also have in the InChI code fairly short unique description of the structure. You can use Accelrys Draw (free-of-charge for academia and private use) to generate structures from InChI names and vice versa.

We were one of the first suppliers using this code. We have acquired the software from Xemistry GmbH. This code is very good and handles complex stereochemistry.  

 

Download by ftp

We recommend that you use a ftp client like FileZilla (http://filezilla-project.org/).

Host = 45629.webhosting12.1blu.de

User = ftp45629-ftp

Password = akosgmbh

In the ftp directory who will find all our compounds in several SDFiles. If you want to download only those files that contain compounds that are with very high probability on stock, go to the CAS subdirectory.

Custom Synthesis:  AKos/A1Synth can synthesize larger amounts of compounds for you which are no longer in stock (typically> 10g to 1 kg). 

Also, you can rent a chemists for a month as a full term equivalent to synthesize compounds under a secrecy agreement.

Mesoionic Compounds - SYDNONES AND SYDNONE IMINES in AKos Samples.
Use the program PASS to predict more than 4'000 biological effects. PASS should be one of  your programs used for in silico screening to filter  compounds quickly. PASS calculates also drug likeness. This parameter gives in percentage the probability that this structure is drug like. 

Download PASS demo version

 

The following compounds are patent protected and cannot be sold. If you have downloaded these data into your database, please remove these compounds.

 

AKos Compound Name

AKos Compound # Alternate Name
1H-Indole, 3-[[(2R)-1-methyl-2-pyrrolidinyl]methyl]-5-[2-(phenylsulfonyl)ethyl]- AKOS005145842 Eletriptan
1-Piperidinepropanenitrile, 4-methyl-3-(methyl-7H-pyrrolo[2,3-d]pyrimidin-4-ylamino)-β-oxo-, (3R,4R)- AKOS005258733 tofacitinib
3-Isoquinolinecarboxamide, N-(1,1-dimethylethyl)decahydro-2-[(2R,3R)-2-hydroxy-3-[(3-hydroxy-2-methylbenzoyl)amino]-4-(phenylthio)butyl]-, (3S,4aS,8aS)- AKOS000280862 Nelfinavir mesolate
6,10-Methano-6H-pyrazino[2,3-h][3]benzazepine, 7,8,9,10-tetrahydro- AKOS005145561 Varenicline
6,10-Methano-6H-pyrazino[2,3-h][3]benzazepine, 7,8,9,10-tetrahydro-, (2R,3R)-2,3-dihydroxybutanedioate (1:1) AKOS005146509 Varenicline Hydrochloride
    Varenicline tartrate
Butanedioic acid, 2-hydroxy-, (2S)-, compd. with N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-1,2-dihydro-2-oxo-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carboxamide (1:1) AKOS005145765 Sunitinib Malate
Hexanoic acid, 3-(aminomethyl)-5-methyl-, (3S)- AKOS005145504 Pregabalin 
Methanesulfonamide, N-[4-[2-[methyl[2-[4-[(methylsulfonyl)amino]phenoxy]ethyl]amino]ethyl]phenyl]- AKOS005259921 Dofetilide 
Urea, N-[4-[[4-(dimethylamino)-1-piperidinyl]carbonyl]phenyl]-N'-[4-(4,6-di-4-morpholinyl-1,3,5-triazin-2-yl)phenyl]- AKOS005766013 PF-05212384
Favipiravir AKOS005166863 CAS No. 259793-96-9
Favipiravir AKOS015995178 CAS No. 259793-96-9

 

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